more cleanup. soon to be free of all nonsense

.gitignore

@@ -0,0 +1,48 @@
+# -*- mode: gitignore; -*-
+*~
+\#*\#
+/.emacs.desktop
+/.emacs.desktop.lock
+*.elc
+auto-save-list
+tramp
+.\#*
+
+# Org-mode
+.org-id-locations
+*_archive
+
+# flymake-mode
+*_flymake.*
+
+# eshell files
+/eshell/history
+/eshell/lastdir
+
+# elpa packages
+/elpa/
+
+# reftex files
+*.rel
+
+# AUCTeX auto folder
+/auto/
+
+# cask packages
+.cask/
+dist/
+
+# Flycheck
+flycheck_*.el
+
+# server auth directory
+/server/
+
+# projectiles files
+.projectile
+
+# directory configuration
+.dir-locals.el
+
+# network security
+/network-security.data

Xresources

@@ -1,6 +1,6 @@
 !! URxvt Appearance
 urxvt*termName: rxvt-256color
-urxvt*font: xft:Terminus:style=Regular:size=12
+!urxvt*font: xft:Terminus:style=Regular:size=12
 Xft.autohint: true
 Xft.antialias: true
 Xft.hinting: true

bashrc

@@ -8,15 +8,39 @@ if [[ -f ~/.bash_home ]]; then
  . ~/.bash_home
 fi
 
-#alias emacs='emacsclient -ct'
+# later switch to emacs client when the emacs server is running
+alias emacs='emacsclient -ct'
 alias ls='ls --color=auto'
 alias diff='diff --color=auto'
 alias grep='grep --color=auto'
 alias cp="rsync -r --progress"
 alias mv="rsync -aP --remove-source-files"
 
+
+export PATH=/home/local/ASUAD/rhnatysh/ParaView/install/bin:$PATH
+
+# paraview Python module path vars
+export LD_LIBRARY_PATH=/home/local/ASUAD/rhnatysh/ParaView/install/lib:$LD_LIBRARY_PATH
+export PYTHONPATH=/home/local/ASUAD/rhnatysh/ParaView/install/lib/python3.8/site-packages/:$PYTHONPATH
+
 GREEN="\[$(tput setaf 4)\]"
 GREENER="\[$(tput setaf 2)\]"
 RESET="\[$(tput sgr0)\]"
 
 PS1="${GREEN}\u@\h ${GREENER}\W ${RESET}> "
+
+# >>> conda initialize >>>
+# !! Contents within this block are managed by 'conda init' !!
+__conda_setup="$('/home/local/ASUAD/rhnatysh/Apps/miniconda3/bin/conda' 'shell.bash' 'hook' 2> /dev/null)"
+if [ $? -eq 0 ]; then
+    eval "$__conda_setup"
+else
+    if [ -f "/home/local/ASUAD/rhnatysh/Apps/miniconda3/etc/profile.d/conda.sh" ]; then
+        . "/home/local/ASUAD/rhnatysh/Apps/miniconda3/etc/profile.d/conda.sh"
+    else
+        export PATH="/home/local/ASUAD/rhnatysh/Apps/miniconda3/bin:$PATH"
+    fi
+fi
+unset __conda_setup
+# <<< conda initialize <<<
+

emacs

@@ -5,7 +5,16 @@
 (add-to-list 'package-archives '("marmalade" . "http://marmalade-repo.org/packages/") t)
 (add-to-list 'package-archives '("melpa" . "http://melpa.org/packages/") t)
 (package-initialize)
-      
+
+;; emacs preferences
+(setq-default cursor-type 'bar)
+(global-hl-line-mode 1)
+(menu-bar-mode -1)
+(toggle-scroll-bar -1)
+(tool-bar-mode -1)
+(setq interprogram-cut-function nil)
+(setq backup-directory-alist '(("" . "~/.emacs.d/backup")))
+
 (eval-when-compile
   (require 'use-package))
 
@@ -29,7 +38,7 @@ Return a list of installed packages or nil for every skipped package."
 (or (file-exists-p package-user-dir)
     (package-refresh-contents))
 
-(ensure-package-installed 'smex 'magit `centaur-tabs `eglot `telephone-line `dashboard `multiple-cursors `flycheck `which-key `restart-emacs `doom-themes `rainbow-delimiters `neotree `all-the-icons)
+(ensure-package-installed 'use-package 'smex 'magit 'centaur-tabs 'eglot 'telephone-line 'dashboard 'multiple-cursors 'flycheck 'which-key 'restart-emacs 'doom-themes 'rainbow-delimiters 'neotree 'all-the-icons)
 (package-initialize)
 
 (use-package company)
@@ -58,8 +67,7 @@ Return a list of installed packages or nil for every skipped package."
 (when (fboundp 'windmove-default-keybindings)
   (windmove-default-keybindings))
 
-(setq-default cursor-type 'bar)
+(require 'which-key)
-(setq backup-directory-alist '(("" . "~/.emacs.d/backup")))
 (which-key-mode)
 
 (use-package dashboard
@@ -68,39 +76,29 @@ Return a list of installed packages or nil for every skipped package."
   (setq dashboard-set-footer nil
         dashboard-org-agenda-categories '("Tasks" "appointments")))
 
-(setq interprogram-cut-function nil)
-
 (require 'multiple-cursors)
 (global-set-key (kbd "C-S-c C-S-c") 'mc/edit-lines)
 (global-set-key (kbd "C->") 'mc/mark-next-like-this)
 (global-set-key (kbd "C-<") 'mc/mark-previous-like-this)
 (global-set-key (kbd "C-c C-<") 'mc/mark-all-like-this)
 
-(menu-bar-mode -1)
+(require 'neotree)
-(toggle-scroll-bar -1)
+(global-set-key [f8] 'neotree-toggle)
-(tool-bar-mode -1)
+
+;; org settings
+(setq org-replace-disputed-keys t)
+(define-key global-map "\C-cl" 'org-store-link)
+(define-key global-map "\C-ca" 'org-agenda)
+(setq org-log-done t)
+
+(setq org-agenda-files (list "/home/local/ASUAD/rhnatysh/Seafile/Emacs/Org Notes/Notes.org"
+			     "/home/local/ASUAD/rhnatysh/Seafile/Emacs/Org Notes/school.org"))			    
+
+(add-hook 'diary-list-entries-hook 'diary-sort-entries t)
 
-(require `neotree)
+(setq custom-file (concat user-emacs-directory "custom.el"))
-(global-set-key [f8] `neotree-toggle)
+(load custom-file 'noerror)
 
-;;(cond ((file-exists-p "~/.emacs_home.el") (load "~/.emacs_home.el")))
+(cond ((file-exists-p "~/.emacs_home.el") (load "~/.emacs_home.el")))
 
 ;;; .emacs ends here
-(custom-set-variables
- ;; custom-set-variables was added by Custom.
- ;; If you edit it by hand, you could mess it up, so be careful.
- ;; Your init file should contain only one such instance.
- ;; If there is more than one, they won't work right.
- '(custom-enabled-themes (quote (doom-wilmersdorf)))
- '(custom-safe-themes
-   (quote
-    ("a6e620c9decbea9cac46ea47541b31b3e20804a4646ca6da4cce105ee03e8d0e" "a9a67b318b7417adbedaab02f05fa679973e9718d9d26075c6235b1f0db703c8" default)))
- '(package-selected-packages
-   (quote
-    (restart-emacs which-key flycheck use-package telephone-line smex multiple-cursors magit eglot dashboard company centaur-tabs))))
-(custom-set-faces
- ;; custom-set-faces was added by Custom.
- ;; If you edit it by hand, you could mess it up, so be careful.
- ;; Your init file should contain only one such instance.
- ;; If there is more than one, they won't work right.
- )

emacs_home.el

@@ -57,28 +57,28 @@
     (cfw:cal-create-source "Orange")
     )))
 
-(setq org-replace-disputed-keys t)
-(define-key global-map "\C-cl" 'org-store-link)
-(define-key global-map "\C-ca" 'org-agenda)
-(setq org-log-done t)
 (setq org-agenda-files (list "~/Documents/org-mode/tweaking.org"
 			     "~/Documents/org-mode/school.org"
 			     "~/Documents/org-mode/untitled_project.org"
 			     "~/Documents/org-mode/personal.org"))
+
 (add-to-list 'auto-mode-alist '("neomutt" . mail-mode))
+
 (setq appt-message-warning-time 15
       appt-display-format 'window)
 (appt-activate 1)
+
 (defun notify-send (title msg)
   (interactive)
   (shell-command (concat "notify-send '" title "' '" msg "'")))
 (defun facade-notify-appt (min-to-app new-time msg)
   (notify-send (format "Appointment in %s minute(s)" min-to-app) msg))
 (setq appt-disp-window-function (function facade-notify-appt))
+
 (add-hook 'diary-list-entries-hook 'diary-sort-entries t)
+
 ;; not perfect, messes up theme if you switch from terminal to gui and
 ;; vice versa, but whatever
-
 (add-hook 'after-make-frame-functions
 	  (lambda (frame)
 	    (select-frame frame)